Saturday, June 22, 2013

June News and Announcements

Dear Sediment Experimentalists,

Hope your summer months are full of experiments and experimental data. This month we've compiled a few items for you on data management, experimental method publication, meetings, and social networking.

1. How do you manage your data?
2. Want to share your experimental method
3. The International Workshop on Stratodynamics
4. Join the EarthCube Member Connections Site

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1. How do you manage your data?We'd like to know, and we hope that you do too!  We've created a new page on our Sediment Experimentalists website to collect ideas.  Take a look!  Check out the examples already provided, or create your own and email it to us at sedimentexp@gmail.com.  More information is available on the website for how to do this.

2. Want to share your experimental methods, but feel that typical paper journals aren't cutting it?
Then consider submitting a manuscript to the Journal of Visualized Experiments (JOVE)!  JOVE is a peer-reviewed journal for experimental methods in disciplines across the sciences.  You submit a manuscript as you normally would to any other journal, but if accepted, JOVE will send a filming team to your lab to document the methods described in your paper.  In addition to the other traditional editorial functions provided by the journal, production of the methods film and video hosting on the JOVE website are included in the cost of publication ($2400 -- standard access, $4200 -- open access).  Starting this fall, JOVE will be publishing articles in the environmental sciences, and they are now open to manuscript submissions.  Click here for more information.

3. The International Workshop on Stratodynamics will be held August 28-30, 2013, at Nagasaki University in Japan.

The international workshop “Stratodynamics” aims to develop a new research framework for understanding sedimentary processes, geomorphology and genetic stratigraphy on the basis of morphodynamics of earth surface processes. The topics in the workshop will include experimental and theoretical studies of bedforms, geomorphological processes and the genetic stratigraphy. We also welcome research based on field measurement, computational modeling and coupled interdisciplinary works. Workshop discussion will focus on basic concepts, future research targets, and user requirements for accessing experimental data and advanced experimental technologies to address grand challenges in stratodynamics.

The workshop will include keynote speakers, small-group discussion sessions, community flume experiments, and oral and poster presentations from participants.


Registration
To register please contact the organizing committee at stratodynamics@gmail.com
Registration deadline: July 15th 2013

4. Join the EarthCube Member Connections Site
EarthCube is an initiative to build linkages among earth-science researchers, with a focus on discovery and access to data.  EarthCube recently created a social networking site, "EarthCube Member Connections," to build these linkages.  It's really important to get many people to join, as this will demonstrate the interest of our community to NSF, which will in turn affect funding decisions!  You can see the site here: http://earthcube.ning.com/page/earthcube-member-connections

Please take a few minutes to sign up!  Unfortunately, the sign up process is not extremely intuitive, so I've written some instructions based on my own experience.

1. First, you need to become a member of EarthCube.   Go the EarthCube site: http://earthcube.ning.com/, then click "Sign Up" on the right side of the page.

2. Once you've created an EarthCube page, this information should populate into the EarthCube Member Connections site.  Unfortunately, this process does not appear to be entirely automatic.  So, I suggest you send an email to ec_apps@sdsc.edu to ask them to populate your Member Connections card.  You may need to give this a couple of days.  NOTE: The Member Connections site requires Microsoft Silverlight (a free web app) to function properly.

3. Once populated, your EarthCube Member Connections card will only contain basic information.  To update it with information such as domain (i.e. your subdiscipline) and a statement about your research interests, go to the Member Connections site and search for your name.  Once you've found your name card, double click on it.  A pop-up window should appear (if not, I suggest trying another browser such as Firefox or IE).  Once your card appears in the popup window, click to "Create Account."  Once you've done this, you should be able to login and add your information / research interests to the card.

Saturday, May 4, 2013

May 2013 Announcements and Opportunities

Dear Sediment Experimentalists,

Please read below for several opportunities to share, use, and link your experimental data and results:
  1. Linking Experimental Data and Models
  2. Data Rescue
  3. EarthCube Member Connections Site
  4. Amtrak Club: Soil to Sea Geomorphology (registration deadline May 6)
Contact us with any questions or comments!
Sediment Experimentalists
Blog: http://sedimentexperiments.blogspot.com/
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1. Linking Experimental Data and Models

Data and models go hand in hand. Experimentalists tend to have lots of data, and modelers tend to be looking for data for model validation and testing. Several recent efforts in the CSDMS (Community Surface Dynamics Modeling System) and EarthCube communities encourage and facilitate the connection of data and models. Sediment Experimentalists can help the cause by exposing our datasets, documenting them properly, and engaging modelers in dialog for how to best connect data and models.

The recent CSDMS meeting took on this topic in the Terrestrial Working Group breakout session, and data subgroup was born (see the CSDMS TWG data page). We also have a space on the CSDMS site to collect general ideas of linking experimental data and models (see the CSDMS Experimental Data wiki page). Email us at sedimentexp@gmail.com if you want to participate or have ideas for improving data-model connections.

2. Data Rescue

Where will your data be in 20 years? Rescuing data that is in danger of being lost on old disks or paper printouts is a growing priority in the science community and beyond.

Check out the International Data Rescue Award in the Geosciences, organized by Elsevier Research Data Services and IEDA (Integrated Earth Data Applications). The award was established to improve the preservation and access of research data in the Geosciences, particularly of dark data, and to share the varied ways that these data are being processed, stored, and used. The winner of the challenge will receive a $5000 prize at the American Geophysical Union meeting in December 2013.

3. EarthCube Member Connections Site

Be on the leading edge of Earth Science Cyberinfrastructure and create a profile in the EarthCube Member Connections site (small print: requires Silverlight and does not work on the Chrome browser). The site matches disciplinary scientists with cyberinfrastructure experts, making it easier to connect science and technology to build helpful Earth Science applications.

Instructions on how to join are posted (link), but email us if you have any questions or need help completing your profile. The first step is to sign up for an account the EarthCube site, and when you do, be sure to join other Sediment Experimentalists in the Experimental Stratigraphy group!

4. Amtrak Club Soil to Sea Geomorphology

An announcement from our friends:

Attached (note: attached to the original email) is the FINAL FLYER for the 2nd annual symposium "Soil to Sea Geomorphology".  The aim of this symposium is to facilitate the formation of a regional network of scientists studying all aspects of Earth-surface science. It is inspired by community-building events such as the annual Gilbert Club meeting following AGU, and in that spirit there will be ample time for discussion and socializing. Three aspects that make Soil to Sea Geomorphology different, however, are: (1) a majority of presentations will be given by graduate students and postdocs, to give exposure to and encourage constructive discussion of their work at an early stage; (2) attendees will hail from locations typically within a 1-day Amtrak ride, in order to build and strengthen ties among regional institutions that may lead to future collaborations. Thus, we whimsically refer to this new symposium as the “Amtrak Club"; and (3) we anticipate future events changing the venue location and moving among Mid-Atlantic Universities that are willing to host it.

The second Amtrak Club meeting will be held on the campus of The Johns Hopkins University, in Baltimore, May 17-18, 2013. The format will be five thematic sessions spread over two days, covering topics such as: landscape evolution, sediment transport and soil production, coastal processes and the sedimentary record, and response of landscapes to anthropogenic disturbances. Each session will feature prominent keynote speakers, while the rest of the slots will be filled with graduate students and postdocs. We have secured some support from The Johns Hopkins University, which allows us to cover some symposium costs.  It is our intention to keep the conference costs minimal to encourage a large number of our colleagues and their graduate students/postdocs to attend.

Our invited speakers will be:
Mark Brandon (Yale), Pat Wiberg (UVA), Karen Prestegaard (UMD), Tess Thompson (VT), Enrica Viparelli (USC)

Registration is open! Registration, abstract, logistics, and housing information in the attached flyer.

Important dates:
Registration and 1-Page abstract deadline….      May  6, 2013

Please help us in advertising this conference!  You can help by posting the attached and future circulars and by encouraging your graduate students and post-docs to submit an abstract. If you have suggestions or comments, and if you do or do not want to be included in future, please send a note to amtrak.club@gmail.com.   

Best,

The 2013 Amtrak Club Organizing Committee:

Jane Willenbring (University of Pennsylvania)
Doug Jerolmack (University of Pennsylvania)
Ben Horton (University of Pennsylvania)
Katie Skalak (U.S. Geological Survey)   
Peter Wilcock (John Hopkins University)

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Friday, May 3, 2013

International Workshop on Stratodynamics

The International Workshop on Stratodynamics will be held August 28-30, 2013, at Nagasaki University in Japan.

The international workshop “Stratodynamics” aims to develop a new research framework for understanding sedimentary processes, geomorphology and genetic stratigraphy on the basis of morphodynamics of earth surface processes. The topics in the workshop will include experimental and theoretical studies of bedforms, geomorphological processes and the genetic stratigraphy. We also welcome research based on field measurement, computational modeling and coupled interdisciplinary works. Workshop discussion will focus on basic concepts, future research targets, and user requirements for accessing experimental data and advanced experimental technologies to address grand challenges in stratodynamics.

The workshop will include keynote speakers, small-group discussion sessions, community flume experiments, and oral and poster presentations from participants.

See the flyer for more information about the workshop agenda.

Registration
To register please contact the organizing committee at stratodynamics@gmail.com
Registration deadline: July 15th 2013



Saturday, February 16, 2013

STEP community experiment December 2012

On December 11, 2012, as part of the EarthCube Experimental Stratigraphy Workshop, a community experiment was run in the STEP Basin at University of Texas. Austin. In the experiment, a delta was built into standing water as coarse sediment, fine sediment, and water were fed into the basin. The experiment ran for 8 hours, and the sediment flux, water flux, and basin subsidence were varied as pre-specified by workshop participants. After the experiment, the basin was drained and vertical slices were taken and photographed in order to see the internal stratigraphy of the delta (movie #2 below).

In the spirit of a community experiment, data from the experiments, including control programs, deposit slice images, and topographic scans, are available for analysis in the shared workshop materials folder. Direct links to the raw data are summarized at the bottom of this post. We have also set up a Community Experiment Forum to capture ideas on how to analyze these shared data. You can contribute ideas and vote on other's suggestions. See what others are saying and add your idea!


STEP Community experiment - Overhead Movie

STEP Community experiment - Deposit Dip Slices Raw


2012 December STEP Community Experiment 2012 Google Folder

Share your data with figshare

One goal of the Sediment Experimentalists group is to keep readers informed of new tools that may help with data management and archiving. One such tool is figshare, which "allows researchers to publish all of their research outputs in seconds in an easily citable, sharable and discoverable manner."

"figshare was started by a frustrated Imperial College PhD student as a way to disseminate all research outputs and not just static images through traditional academic publishing."

Do you share figshare founder Mark Hahnel's frustration? If so, you are encouraged to try out the site and then let the Sediment Experimentalists know about your experience (by email or blog comment). You can share and organize figures, datasets, media, papers, posters, and presentations.

More resources:

Join our EarthCube group - Be informed!

Are you still confused about the entity called EarthCube? The best way to find out more is to join the EarthCube site. EarthCube has recently formed groups for all of the identified End-User communities. Since we held an EarthCube workshop in December 2012, we have a group called Experimental Stratigraphy. (Although it is named after our inaugural workshop, we plan to make the discussion more broad to encompass all Sediment Experiments.)

You are urged to sign on, join, and recruit others so that we can "provide a forum in which you can continue discussions from your workshop, post important documents (or links to your Google docs folder) and keep up the momentum generated during your workshop."

You can also check out the latest on the other groups that are active in EarthCube. This is yet another way to keep up with the multitude of opportunities available in all things data and cyberinfrastructure. It also helps to place our community on the map and draw attention to our data and cyberinfrastructure dreams.

If you haven't already, it is time to join the not-so-new experiment of Social Media:
Join the Experimental Stratigraphy Group today!

Tuesday, January 22, 2013

Surface Process Experiments -- Town Hall Report

It has been about one year since we started this group, and we want to thank everyone who has contributed their time, suggestions, or even just interest and attention. In the next few emails we will report on some of the recent events. The first report is on the Town Hall that was held at the AGU Fall Meeting. If this summary sparks any ideas or comments you’d like to share, contact us!

Town Hall summary

On December 7, 2012, we convened a town hall meeting on “Surface Process Experiments – A Community Discussion” to solicit from the AGU Earth and Planetary Surface Process (EPSP) focus group community opinions, challenges, and future directions on managing Earth-surface experimental data sets. The meeting included six panelists with perspectives from collaborative community initiatives, funding agencies, and journal publishers. Approximately 70 people attended the meeting, which was funded by NCED (A full report and transcript of the meeting is available at: http://tinyurl.com/sedex-townhall2012).

Panelists and audience members expressed universal concern for the current lack of infrastructure and support for data management and sharing for our particular data types. Participants expressed challenges falling into three primary categories:

(1) Data structure and description
: Metadata describing data provenance, structure, and uncertainty are as important if not more important than raw data itself. Templates and guidelines would help, though the diversity of experimental types and institutional directives likely preclude a universal standard.

(2) Long-term archiving: Preserving data in usable and accessible formats over time spans far exceeding typical funding and project cycles (>10 years) is a challenging and expensive prospect but extremely important for our community.

(3) Publication and recognition
: Scientists will only invest their time in data management if they feel their efforts are recognized, and publication of citable “data papers” appears a natural answer to this question. AGU journals support publication of data papers, but fundamental questions about data paper structure, scope, and attribution must be overcome to attract more than a token number of such submissions.

Participants identified limited human, computing, and financial resources as major barriers to proper data management, especially in smaller universities and facilities. Furthermore, data and experiments come in many different forms (and degrees of processing), and it is hard to imagine a generalized way to describe these. Rather than starting from scratch, many participants suggested that we learn from and build on existing resources, such as the NCED data repository and the Consortium of Universities for the Advancement of Hydrologic Science, Inc. (CUAHSI) Hydrologic Information System (HIS). The best approach to managing data will likely combine top-down directives and support (for example, NSF could potentially provide support for long term data archiving and centralized databases) with bottom-up engagement by Earth-surface scientists to define database structures, templates, and guidelines.

Best regards,
Raleigh Martin
Wonsuck Kim
Brandon McElroy
Leslie Hsu